Datasets

Subject
Creator
Type
Date

subject: Biochemistry

Total is 48 Results
Global coexpression analysis of genes in haplotype-phased genome of tetraploid blueberry.

10.4231/0FAA-GK65

Jennifer Wisecaver, 0000-0001-6843-5906, Patrick Edger

02/18/2019

Global coexpression analysis of blueberry genome identify genes co-regulated during fruit development and associated with phytonutrient biosynthesis

Biochemistry Blueberry Gene Expression Plant Metabolism RStudio

Maize 282 Kernel Ion and Isotope BLUPs

10.4231/R7TT4P5D

Brenda F Owens, Brian Dilkes, 0000-0003-2799-954X

05/31/2018

The 282 member maize association panel was grown under irrigated and non-irrigated conditions and kernels were phenotyped for ionome and isotope traits.

Biochemistry Carbon Drought Ionome Isotope Maize

Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors - Supporting data for Hall and Ma et al. (2018)

10.4231/R77W69FM

Hana Hall, Jingqun Ma, Sudhanshu Shekhar, Vikki Weake, 0000-0002-5933-9952, Walter Leon-Salas

06/20/2018

Supporting and raw data for Hall and Ma et al. (2018) Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors. BMC Neuroscience.

Biochemistry Blue Light Differential gene expresion Drosophila Eye Gene Expression Profiling Retinal Degeneration RNA_seq Transcriptome

Proper splicing contributes to visual function in the aging Drosophila eye - Supporting data for Stegeman et al. (2018)

10.4231/R7ZG6QGD

Hana Hall, Henry Chang, Rachel Stegeman, 0000-0002-7563-8506, Spencer Escobedo, Vikki Weake, 0000-0002-5933-9952

06/07/2018

Supporting data and protocols for for Stegeman et al. (2018). Proper splicing contributes to visual function in the aging Drosophila eye. Aging Cell.

Aging Biochemistry Drosophila Eye Gene Expression Profiling Splicing Transcriptome Vision

The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability - Supporting data for Torres-Zelada et al. (2018)

10.4231/R72V2DD0

Aktan Alpsoy, Benjamin D. Anderson, Eliana F. Torres-Zelada, Emily C. Dykhuizen, Laurence Florens, Michael P. Washburn, Robert E. Stephenson, Selene K. Swanson, Vikki Weake, 0000-0002-5933-9952

12/11/2018

Supporting data and protocols for for Torres-Zelada et al. (2018). The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability. Journal of Cell Science.

Biochemistry Chiffon Dbf4 Drosophila Gcn5 Gene Expression Histone Acetylation Replication

Evaluation of Function Predictions for Moonlighting Proteins

10.4231/D3T727G0X

Catherine Rayon, Daisuke Kihara, 0000-0003-4091-6614, Ishita K. Khan, Meghana Chitale

02/14/2013

Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

Biochemistry Bioinformatics Molecular Biosciences proteomics

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

10.4231/D3Z02Z836

Daisuke Kihara, 0000-0003-4091-6614, Meghana Chitale, Troy Hawkins

02/14/2013

Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

Biochemistry Bioinformatics Computational Biology / Methods Genetic Molecular Biosciences Proteins / Metabolism

Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

10.4231/D3PK0719W

Daisuke Kihara, 0000-0003-4091-6614, David Yifeng

02/14/2013

Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

Algorithms Biochemistry Bioinformatics databases Molecular Biosciences Protein Proteins / chemistry

Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

10.4231/D3DR2P83H

Daisuke Kihara, 0000-0003-4091-6614, H. Huang, Y.H. Tan

03/08/2013

Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

Amino Acids/chemistry Biochemistry Bioinformatics Molecular Biosciences Protein Folding

Comparative genomics of small RNAs in bacterial genomes

10.4231/D37659F6Q

Daisuke Kihara, 0000-0003-4091-6614, Stan Luban

03/08/2013

Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

Bacterial Bacterial/Genetics Biochemistry Bioinformatics Deinococcus/Genetics Escherichiacoli/Metabolism Molecular Biosciences Multigene Family RNA

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